fishery observer data query

currently setup for pulling haul level detail for age or length compositions

q_fish_obs(year, species, area, db, print_sql = FALSE, save = TRUE)

Arguments

year

max year to retrieve data from

species

numeric agency values e.g. c("131", "132") - must be 3 digit codes (norpac species codes)

area

fmp_area (GOA, BSAI) or fmp_subarea (BS, AI, WG, CG, WY, EY, SE) - also available (SEI, PWSI), can use all fmp_areas or all fmp_subareas, but don't mix the two

db

data server to connect to (akfin)

print_sql

outputs the sql query instead of calling the data - save must be false

save

saves a file to the data/raw folder, otherwise sends output to global enviro (default: TRUE)

Value

saves observer data as data/raw/fish_obs_data.csv or outputs to the global environment, save also saves a copy of the SQL code used for the query and stores it in the data/sql folder.

Examples

if (FALSE) {
db <- afscdata::connect()
q_fish_obs(year=2022, species=301, area="goa", db=db)
}