Package index • afscdata

All functions

accepted_model(): copy the previous SSC accepted model as the new "base" model
bsai_amak(): raw data query for the BSAI Atka mackerel assessment
bsai_amak_catch_1977_1990: BSAI Atka mackerel historical catch
bsai_atf(): raw data query for BSAI arrowtooth flounder
bsai_fhs(): raw data query for BSAI flathead sole
bsai_fhs_catch_1964_1994: BSAI flathead sole historical catch data 1964-1994
bsai_nrs(): raw data query for BSAI northern rocksole
bsai_octopus(): raw data query for BSAI octopus
bsai_orox(): raw data query for BSAI other rockfish
catch_to_ss3(): Reformat Catch to SS3 structure currently only handles a single fleet, values in t
collapse_filters(): utility function for sql queries
connect(): utility function to connect to server
disconnect(): utility function to disconnect from server
fmp_key: Sablefish fmp area key by location
gap_check_bio(): compare GAP updated survey biomass to (now) retired design-based biomass estimates
goa_amak(): raw data query for the GOA Atka mackerel assessment
goa_atf(): raw data query for GOA arrowtooth founder
goa_atf_catch_1961_1990: GOA arrowtooth flounder historical catch data
goa_dusk(): raw data query for GOA dusky rockfish
goa_dusk_catch_1977_1990: GOA dusky rockfish historical catch data
goa_fhs(): raw data query for GOA flathead sole
goa_fhs_catch_1978_1990: GOA flathead sole historical catch
goa_nork(): raw data query for GOA northern rockfish
goa_nork_catch_1961_1992: GOA northern rockfish historical catch data
goa_octopus(): raw data query for GOA octopus
goa_pcod_catch_1977_1990: GOA Pacific cod historical catch
goa_pcod_larval_indices: GOA Pacific cod historical larval index data
goa_pop(): raw data query for GOA POP
goa_pop_catch_1960_1990: GOA POP historical catch data
goa_pop_fixed_fish_length_comp: GOA POP historical fishery length comp data
goa_rebs(): raw data query for GOA rougheye/blackspotted rockfish
goa_rebs_catch_1977_2004: GOA rougheye/blackspotted rockfish historical catch data
goa_shal_flats(): raw data query for GOA shallow-water flatfish
goa_thornyhead(): raw data query for GOA thorynhead rockfish
q_bts_agecomp(): query bottom trawl survey agecomps
q_bts_biomass(): query bottom trawl survey biomass
q_bts_gap_agecomp(): query GAP bottom trawl survey agecomps
q_bts_gap_length(): query bottom trawl survey length data from GAP on the AKFIN server
q_bts_gap_sizecomp(): query GAP bottom trawl survey sizecomps
q_bts_gap_specimen(): query GAP bottom trawl survey specimen data from the AKFIN server
q_bts_length(): query bottom trawl survey length data from the AFSC server
q_bts_sizecomp(): query bottom trawl survey sizecomps
q_bts_specimen(): query bottom trawl survey specimen data from the AFSC server
q_catch(): query fishery catch data from AKFIN server
q_catch_foreign(): query foreign catch data from the AKFIN server
q_date(): utility function for date of data query
q_discards(): query fishery discard data from AKFIN server
q_fish_obs(): fishery observer data query
q_fish_ticket(): query fish ticket data
q_fsh_length(): query fishery length data from the AKFIN server
q_fsh_specimen(): query fishery specimen data from the AKFIN server
q_gap_biomass(): query GAP products bottom trawl survey biomass note: pay attention to the 'design_year' column, particularly for region or depth queries as there may be data duplicates
q_incidental(): query incidental FMP species catch estimates
q_lls_length(): query nmfs longline survey raw length frequencies at the depth stratum and station level
q_lls_rpn(): query nfms longline survey relative population numbers or weights
q_lls_rpn_length(): query nfms longline survey rpn-weighted length frequencies
q_lls_sable_specimen(): query nmfs longine survey specimen data (age, length, weight, sex, maturity). only available for sablefish!
q_nontarget(): query non-target species catch estimate
q_psc(): query prohibited species catch (psc) estimate
q_specs(): Query specs
saa_pop_60: GOA POP historical size at age parameters data
sabl_fixed_abundance: Sablefish historical abundance data
sabl_fixed_comps: Sablefish age and length comp data
sabl_new_areas: Sablefish defining areas for age samples
sabl_vessel_lengths: vessel lengths
sabl_waa: Sablefish fixed weights at age
setup_folders(): Setup folder structure
sharks(): raw data query for GOA/BSAI sharks
sql_filter(): utility function to filter sql files
sql_read(): utility function to read sql file
sql_run(): utility function to run sql query