Package index • ebswp

All functions

.get_Nage_3_df(): Extract Numbers at age 3

.get_R_rel_df(): Extract Recruits (R) from pollock run

.get_ats_df(): Extract Acoustic Trawl Survey Data

.get_avo_df(): Get avo data into frame

.get_bts_df(): Extract bottom trawl survey data from a list of models

.get_cope_df(): Extract copE data

.get_cpue_df(): Extract CPUE data

.get_like_df(): Extract Likelihood Data Frame

.get_mnage_df(): Extract mean age from pollock model run

.get_recruitment_df(): Get recruitment data

.get_ser_df(): Extract spawning exploitation rate

.get_srr_df(): Extract stock recruitment results

.get_ssb_df(): Extract spawning stock biomass (ssb)

.get_ssb_rel_df(): Extract spawning stock biomass (ssb)

.run_mod(): run pollock model

.run_mod_windows(): run pollock model on windows

.run_proj(): run projection model DOESN"T WORK...dunno why

.run_proj_windows(): run projection model for windows

get_input_data(): Input Data for Model Configuration

get_results(): Fetch Model Results in Parallel

get_tier3_res(): Extract Tier 3 Results

get_vars(): Extract and Compute Several Metrics from Model Output

model_settings: Model Settings List

plot_Nage_3(): Plot predicted Numbers at age 3

plot_R_rel(): Plot predicted recruitment

plot_agefit(): Age Composition Data Plotter t(t() This function generates a series of plots visualizing the age composition data from fisheries assessment. It compares observed and predicted data across different years.

plot_ats(): Plot Acoustic Trawl Survey Biomass Data

plot_avo(): Plot avo data

plot_bts(): Plot bottom trawl survey data

plot_cope(): Plot copepod something

plot_cpue(): Plot predicted CPUE

plot_likes(): Plot Likelihood Values

plot_mnage(): Plot predicted mean age by gear type

plot_recruitment(): Plot predicted recruitment and approximate asymptotic error-bars

plot_sel(): Plot selectivity

plot_ser(): Plot predicted spawning stock biomass (SER)

plot_srr(): Plot Stock-Recruitment Relationship (SRR)

plot_ssb(): Plot predicted spawning stock biomass (ssb)

plot_ssb_rel(): Plot predicted spawning stock biomass (ssb)

print_Tier3_tbl(): Generate and Print Tier 3 Summary Tables

read_admb(): Read ADMB output files

read_ctl(): Read ADMB .ctl file

read_dat(): Read ADMB Data File

read_fit(): Read ADMB .par, .std, and .cor file and return an R object of type 'list' of estimates and correlations

read_psv(): Read ADMB .psv file

read_rep(): Read ADMB .rep file

rescale_cov(): Rescale a Covariance Matrix

run_model(): Run Multiple ADMB Models in Parallel

run_proj(): Run Multiple projection models in Parallel

tab_fit(): Tabulate fits from models using extended metrics.

tab_ref(): Tabulate fits from models using extended metrics.

upperCaseFirst(): Helper function to convert the first character of a string to uppercase.

write_dat(): Write Data to Text File